#!/bin/bash
set -e

pkg=ragout

if [ "$AUTOPKGTEST_TMP" = "" ] ; then
  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi

cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP

cd $AUTOPKGTEST_TMP

gunzip -r *

set -x
ragout E.Coli/ecoli.rcp --outdir E.Coli/out/ --refine
ragout H.Pylori/helicobacter.rcp --outdir H.Pylori/out/ --refine
ragout S.Aureus/aureus.rcp --outdir S.Aureus/out/ --refine
ragout V.Cholerae/cholerae.rcp --outdir V.Cholerae/out/ --refine
